Function reference • arkhe

Classes
`AbundanceMatrix()`	Relative Frequency Matrix
`CountMatrix()`	Absolute Frequency Matrix
`IncidenceMatrix()`	Incidence Matrix
`OccurrenceMatrix-class`	Co-Occurrence Matrix
`SimilarityMatrix-class`	Similarity Matrix
`StratigraphicMatrix-class`	Stratigraphic Matrix
`as_long()` `as_count()` `as_abundance()` `as_incidence()` `as_occurrence()` `as_similarity()` `as_features()` `as_stratigraphy()`	Coerce
Getters and Setters
`get_id()` `set_id<-`() `get_method()` `set_method<-`() `get_units()` `get_totals()` `set_totals<-`()	Get or Set Parts of an Object
`[`(<DataMatrix>) `[[`(<DataMatrix>) `[<-`(<DataMatrix>) `[[<-`(<DataMatrix>)	Extract or Replace Parts of an Object
Common Operations
`Arith(<DataMatrix>,<DataMatrix>)` `Arith(<DataMatrix>,<numeric>)` `Arith(<DataMatrix>,<logical>)` `Compare(<DataMatrix>,<DataMatrix>)` `Compare(<DataMatrix>,<numeric>)` `Logic(<DataMatrix>,<DataMatrix>)` `Logic(<DataMatrix>,<numeric>)` `Logic(<DataMatrix>,<logical>)` `Math(<DataMatrix>)` `Math2(<DataMatrix>)` `Summary(<DataMatrix>)`	Common Operations on Matrix Objects
Statistics
`rowMeans(<DataMatrix>)` `colMeans(<DataMatrix>)` `rowSums(<DataMatrix>)` `colSums(<DataMatrix>)`	Rowwise and Columnwise Statistics
Utilities
`remove_NA()` `remove_zero()`	Data Cleaning
Chronology
`get_dates()` `set_dates<-`()	Chronological Information

Reference